ABA V1.01: A program for multiple sequence alignment

A-Bruijn Aligner (ABA) is a new method for multiple sequence alignment that represents an alignment as a directed graph, possibly contains cycles. This representation permits alignments that contain repeated and/or shuffled elements.

A full description can be found in:

A Novel Method for Multiple Alignment of Sequences with Repeated and Shuffled Elements.
Benjamin Raphael, Degui Zhi, Haixu Tang, and Pavel Pevzner.
Genome Research (2004) 14,(11)2336-46.

ABA V1.01 code and executables are available at the ABA download page.

New version 1.01 (January 18, 2005)

. Changes:
  • Executable for OS X
  • Added a wrapper for clustalw
  • Updated Perl scripts to work with Bioperl 1.4
  • Other minor changes

    • Update: ABA source code is now available for download from the ABA download page.


    Please contact aba-help@cs.ucsd.edu for questions.