GRIMM - Genome rearrangement algorithms

# genomes:      
Genome 1:
Genome 2:
Genome 3:
Chromosomes: circular linear (directed) multichromosomal or undirected
Signs: signed unsigned
           Or,

Multiple genome options

Action: Distance matrix only Phylogenetic tree (MGR)
Tree size: Edge length proportional to distance       Total width of tree
Not proportional

Pairwise scenario formatting options

Report Style:
One line per genome
(chromosomes concatenated)		   One column
(chromosomes separated)		   Two column before & after
(chromosomes separated)
Horizontal
Vertical		   Yes   Show all chromosomes
Only affected chromosomes
Show all possible initial steps of optimal scenarios
Highlighting style: Should operations (reversal, translocation, fission, fusion) be highlighted, and when?
before after between/both no highlighting
Chromosome end
format:		 numeric (10) subscripts (C10) omit
Color coding: Genes should be colored according to their chromosome in which genome:
source destination
GRIMM 1.04 by Glenn Tesler, University of California, San Diego.
Copyright © 2001-2005, The University of California.
Contains code from GRAPPA, © 2000-2001, The University of New Mexico and The University of Texas at Austin.

MGR 1.36 by Guillaume Bourque, currently at the Genome Institute of Singapore.
Copyright © 2001-2005.
Contains code from Phylip 3.5, Copyright © 1986-1995 by Joseph Felsenstein and the University of Washington.

We thank the National Biomedical Computing Resource at the San Diego Super Computer Center for hosting this web server.

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